PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG464200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 475aa    MW: 53172.5 Da    PI: 5.6832
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG464200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11274320354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +a+ + Er RR+++N ++  Lr+l P++     +K++ a+i+  A+eYI++L
  Pavir.1KG464200.1.p 274 KANFATERERREQLNVKYGALRSLFPNP-----TKNDRASIVGDAIEYINEL 320
                          68899***********************.....9***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.402271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.09E-12273336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-8274320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-8277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-10278335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-7280325No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MIAGGGYFDG SHDHILMEGS MIHDPSQSSI YDSTNEEQQN FRLAPFSIED HSNLANLTSE  60
PARVTDHIQN QLGIDMEQDH SGQMIQEVPP VETANLVPSI YGVHNHILRS QIGESPHNIT  120
VEQQILDYDA ASYRSGTYAT AHDLLNSLQT QRCSLTPEFP STEHIFGDPA QNMVNHLNMN  180
NDLPGIAIQE SGMMFSDSTL PLGYHATQSH MLKDLYHSLP QNYGLFTSDD ERDGMIRAPG  240
ISGNIFQEID ERQFDSPILG SRRRKGGFGK GKGKANFATE RERREQLNVK YGALRSLFPN  300
PTKNDRASIV GDAIEYINEL NRTVKELKTL VEKKRNSTDR RKMLKLDDEA ADDGESSSIQ  360
PVSDDQNNQM NGAIRSSWIQ RRSKECDVDV RIVDDEINIK FTEKKRVNSL LCAAKVLEEF  420
RLDLIHVVGG IIGDHHIFMF NTKIPKGSSV YACAVAKKLL EAVEMKNRAL NIFN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9627970.0EU962797.1 Zea mays clone 245608 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452697.10.0hypothetical protein SORBIDRAFT_04g030850
SwissprotQ7X8R00.0EAT1_ORYSJ; Transcription factor EAT1
TrEMBLC5Y0E40.0C5Y0E4_SORBI; Putative uncharacterized protein Sb04g030850
STRINGSb04g030850.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.23e-54bHLH family protein